Getting Started Module
This module is aimed at people new to the problems of treating Chlamydophila Pneumoniae, Cpni for short, (formerly known as Chlamydia Pneumoniae). If you already understand the problems then I suggest you move on to the handbook.
About Cpni
The first thing to understand is that Cpn (Chlamydophila Pneumoniae formerly known as Chlamydia Pneumoniae) is unlike most bacteria in that it cannot survive as an active organism outside your body's cells. Most bacteria can be treated fairly easily with antibioticsi because they circulate in the blood, this one cannot.
Living inside the cell gives Cpn several advantages:
Another important aspect of Cpn which makes it different to ordinary bacteria and consequently more difficult to treat is that it has three life stages: EBs, RB, and Cryptic.
When treated with a Combined Antibiotic Protocol (CAPi), Cpn dies and as it does, it releases toxins and causes the immune system to produce inflammation in the process of clearing up, these events make people feel unwell. The level of discomfort people feel depends on their individual load of Cpn and the effectiveness of their immune system.
So where do you go from here? It is tempting to want to plunge straight into the treatment but there are several things that you need to think about before you get started.
The other place to go is the FAQs section which may well answer some of your questions and point you to more information, including what tests to request.
Please read the site’s disclaimer statement and be aware that information in this document does not replace your doctor’s advice.
What to Expect from the Treatment.
This treatment will not make you better overnight. Unlike most bacteria Cpni is difficult to get rid of and will take a long time to eradicate. If you think of it as similar to tuberculosis treatment you will have a better understanding of the complexity of the protocol you are about to undertake and the length of time it will take.
One of the problems to getting started that a significant number of people report, is what is described here as 'brain fog'. 'Brain fog' is something that may have crept up on you which makes it more difficult to understand things, make decisions, be rational, remember things. So trying to understand how Cpn makes you ill, deciphering something as complex as the Combined Antibiotic Protocol (CAPi) and knowing enough to be able to convince your doctor to support you in the treatment can be quite an undertaking. Be patient with yourself and expect to read things more than once.
Another of the difficulties you might encounter in the beginning is that you are likely to feel worse, maybe function less well and discover new areas of infection in your body that you knew nothing about. The reason for this is: when Cpn dies it releases toxins in the body which make you feel worse and may cause inflammationi that affects your ability to function. Often old injuries resurface and even areas that had not troubled you up to the present can become painful or uncomfortable. This may be particularly true of the joints of people over 40.
These worsening symptoms might well go on for several months. This can be very frightening and unsettling especially for CFSi or MS patients who might suffer from extreme fatigue or pseudo relapses. A pseudo relapse is an event that feels very much like the real thing but usually recovers without leaving any damage behind. This may happen several times during the treatment.
On the other hand you may be one of the lucky individuals who have little or no reactions to the treatment but still make significant progress.
Keep in mind that reading forum/blog posts can give you a skewed view of the difficulty of the CAP treatment, as you will see more posts from people having difficulty and needing help or encouragment than from people experiencing more mild reaction.
Progress will come slowly at first, it may be subtle and practically unnoticeable except in hindsight. Using a blog to chart your progress or keeping a diary will help to see how far you have come.
In the first few months you will gradually become accustomed to taking the antibioticsi and you may well see some notable improvements, especially if you suffer from conditions involving the upper respiratory system, such as asthmai, bronchitis, sinusitis and otitis or vertigo.
Another often reported initial improvement is body temperature. Many new patients report an inability to control body temperature: icy cold extremities that nothing will warm or repeated flushing. These symptoms often rectify themselves in the first few months.
The treatment of Cpn with an antibiotic protocol is still a work in progress and there are not enough patient experiences to be able to predict how long the treatment will go on for. What we say is that each patient has a different load of Cpn located in different parts of their body which has been afflicting them for a different length of time, so recovery will depend on all these variables and the outcome cannot be predicted. Suffice it to say that the majority of people who continue to report are noting a significant return to health. Dr. Stratton of Vanderbilt University who first formulated a treatment for Cpn suggests that a 3 to 5 years period of treatment is likely to be necessary.
I recommend that you read the Patients’ Stories section to get a feel of what people’s experience of the treatment is like.
Diseasesi and Symptoms Associated with Cpni.
The following is a partial list of diseases which research has shown that a Cpn infection maybe implicated in. There is further explanation about this association between Cpn and disease in the handbook, but this should give you an idea whether your problems may be put at the door of this particular bacterium, many patients having more than one of these diseases:
| Diseases most common to Cpnhelp members | Other diseases Cpn may be involved in |
| Multiple Sclerosis (MS) | Alzheimer’s |
| Rheumatoid Arthritis (RAi) | Dementiai |
| Inflammatory Bowel Diseasei (IBD) | Chronic hepatitis |
| Interstitial Cystitisi (IC) | Systemic lupus erythematosus |
| Fibromyalgiai (FM) | Graves' disease |
| Chronic Fatigue (CF) and Chronic Fatigue Syndromei (CFSi) also called ME | Chronic inflammatory pathologies such as aneurysms |
| Thyroidosis | Beschet's disease |
| Hypertensioni | Graft versus host disease (graft rejection) |
| Asthmai | Haemorrhoids |
| Peripheral neuropathy | Ulcerative colitis |
| Oesophagitis | Disseminated intravascular coagulation |
| Sinusitis | Atherosclerosis |
| Arthritis | Kawasaki's pathology |
| Scleroderma | Coronary artery disease |
| Diabetes mellitus | Stroke |
| Sjogren's | Crohn's disease/vascular inflammatory pathologies |
| Sarcoidosis | Parkinson’s |
| Irritable Bowel Syndrome (IBSi) | Tracheobronchitis |
| Laryngitis, Chronic or recurrent sore throat | Chronic vascular headaches |
| Rosaceai | Chronic inflammatory bowel disease |
Additionally some patients with Alopeciai, and Prostatitis, have reported improvements in their condition.
Treatment
Combined Antibiotic Protocolsi
Below are a number of different protocols as recommended by Drs Stratton, Sriram of Vanderbilt University and Dr Wheldon UK consultant microbiologist. These protocols are constantly being adjusted and you might find that some patients are following a different one from you. To a certain extent the protocol you follow depends on your Cpni load, and because that is often an unknown in the beginning of treatment we recommend that you start with Dr Wheldon’s protocol (unless you or your physician have consulted a doctor familiar with the treatment of Cpn).
Wheldon Protocol
| Antibiotic | Dosage | When taken | Notes |
| Doxycycline | 100mg | Once a day | Take this alone until well tolerated. |
| Azithromycin or Roxithromycin | 250mg 150mg | Mon, Wed, Fri Twice a day | Add either one or the other of these to the 100mg doxycycline you are already taking |
| Doxycycline | 100mg | Twice a day | When both the above are well tolerated add another 100mg of doxycycline |
| Metronidazolei pulse, also called Flagyl.
An alternative is Tinidazole | 400mg or 500mg depending on dose available in your country.
500mg | Three times a day
Twice a day | When the first two antibiotics are well tolerated start pulsing the third. For one day every three to four weeks initially. Increase the number of days per pulse gradually to five days. |
When the protocol is well tolerated Doxycycline and Azithromycin (or Roxithromycin) are taken continuously as outlined above. They prevent Cpn from replicating as well as killing it slowly (these antibiotics are called bacteriostatic antibiotics). After three or four months of these two antibiotics you can start pulsing the third antibiotic.
Definition of a pulse: Think of a cycle of treatment as a period of time. How long that period is depends on how well you are coping with the Combined Antibiotic Protocol (CAPi), usually this cycle is three or four weeks long. Once during this period of time you take Metronidazole (or Tinidazole) for a period of up to 5 days at the full dose. In the beginning of your treatment the pulse may be only one day long, as you tolerate the CAP you can increase the number of days you take the Metronidazole. Well into the treatment you may want to increase the number of days you take Metronidazole (or Tinidazole) beyond the 5 days recommended.
The reason behind a pulse is that Metronidazole or Tinidazole are the killer antibiotics (called bactericides) and when Cpn dies it releases toxins into your blood that your body has to process. This pulsing allows your body to recover and makes the treatment more bearable. Too much bacterial kill at one time is overwhelming to the body. Dr Wheldon regularly revises his protocol and it is worth visiting his website for the latest information.
Sriram Protocol
| Antibiotic | Dosage | When taken | Notes |
| Rifampin | 150mg | Twice a day | Take this on its own for two weeks or as tolerated |
| Azithromycin | 250mg | Mon, Wed, Friday | Take this together with Rifampin for the duration of the treatment |
| Metronidazole | 400mg or 500mg | Three times a day | Start taking this a month into the treatment and take it for 15 days on 15 days off for the duration of the treatment. |
| Sodium or Calcium Pyruvate | 4 to 6g | about an hour before antibiotics (twice a day) | Start this 8 weeks into the treatment. |
Rifampin is a very effective killer of RBs (Reticulating Bodies) and therefore it may take a while to feel comfortable taking it. It may take longer than the two weeks suggested in the chart. It is also worth noting that Rifampin can affect the efficacy of other drugs you may be taking such as Thyroxine for example. It may also cause your liver enzymes to become elevated and for that reason you should be closely monitored by a doctor.
In this protocol Metronidazole pulses are 15 days long. This may well be very difficult to sustain and in that case patients have been advised to reduce the pulse to 7 days in 21.
Stratton Protocol
The Stratton protocol starts off in the same way as the Wheldon Protocol. However the aim is to build up to a point where you are taking all three antibiotics (ABXi) continuously. Once you have achieved that you add:
| Antibiotic | Dosage | When taken | Notes |
| Rifampin | 150mg | Twice a day | Build up as tolerated |
| INHi | 300mg | Once a day | Pulsed with metronidazole or daily |
Recommended Supplementsi
As well as the antibiotics (ABXi) our bodies need these supplementsi to help them recover from the effects of Cpni, the ABXi and the toxins. The most important of these is N-Acetyl Cysteine (NACi). It supports the liver which is going to be doing some hard work during this treatment but more importantly it causes the EBs (Elementary Bodies) to burst open before they have a chance to infiltrate a cell. So it has a direct action on Cpn.
Supplements
| Supplement | Dose | When taken | Notes |
| NAC | 600 to 1200mg | Twice a day | Build up gradually, can cause heartburn |
| Vitamin C | 1g | Once a day |
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| Vitamin E | 800iu | Once a day |
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| Omega 3 Fish Oil | 400mg | Up to three times a day |
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| Evening Primrose Oil | 1g | Once a day |
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| Acetyl L-Carnitine | 500mg daily 150mg | Once a day | Combination available |
| Co-enzyme Q10 | 200mg | Once a day |
|
| Selenium | 200 micrograms | Once a day |
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| Turmeric | 400mg | Once a day | Can help alleviate toxin reactions |
| Melatonini | 1.5mg | At night | If needed for sleep |
| Vitamin D3 | 2000iu | Work up to twice a day | Has antibiotic properties, may cause some die off symptoms |
| Vitamin B12 | 4000 micrograms | Several times a day | Sublingual lozenges. After three months of treatment once a day. |
| Lactobacillus acidophilus | 1g | Twice a day | Not to be taken within two hours of antibiotics |
| Vitamin B complex |
| Once a day |
|
| Calcium Magnesium | 500mg 300mg | In the evening | Usually found in combination. Not to be taken at the same time as Doxycycline. |
The bold supplements are considered the ones that are essential; on the whole these are fairly inexpensive. But if you can afford it you should aim at taking at least the complete list.
There are other supplements that you may be used to taking or that your doctor may recommend so this is not an exhaustive list. There is more information on supplements here. There is more information on antifungals and probiotics here.
Reactions
When you start a Combined Antibiotic Protocol (CAPi) you may get a number of different reactions. Here is a chart of possible issues and followed by some remedies that might help alleviate the discomfort.
| Symptoms | Porphyriai | ||
| Mental/Emotional |
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| Insomnia | X |
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| Depression | X | X |
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| Anxiety | X |
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| Psychosis (hallucinations, delusions, paranoia) | X |
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| Brain fog | X | X |
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| Mental confusion and poor judgment | X |
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| Gastrointestinal problems |
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| Nausea | X |
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| Stomach cramps | X |
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| Constipation | X |
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| Diarrhoea (also from antibioticsi upsetting bowel flora) | X |
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| Episodes of tachycardia (rapid heartbeat) | X |
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| Pain |
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| Painful menses | X | X |
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| Generalized pain and hypersensitivity | X |
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| Chronic headaches and migraines | X | X |
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| Abdominal pain | X |
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| IBSi type flare up | X | X |
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| Other Physical Symptoms |
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| Severe Fatigue | X | X | X |
| Muscular weakness | X |
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| Exercise intolerance | X |
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| Sunburn-susceptibility & photosensitivity (which also can be caused by some antibiotics) | X |
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| Skin |
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| Blisters | X |
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| Itching | X | X |
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| Swelling | X | X |
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| Dark coloured urine | X |
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| Chills- can’t get warm |
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| X |
| Fever |
| X | |